March 13, 2008

Interview with Bora Zivkovic, Crazy Uncle of the Science Blogging Community

Welcome to the latest installment in my occasional series of interviews with people in the scitech world. This time around the subject is Bora Zivkovic, Online Community Manager for the open access journal PLoS ONE. Bora is also well know as a prolific science blogger at his blog A Blog Around the Clock. In yet another persona, Bora has organized two science blogging conferences and edited two anthologies of the best of the science blogs.

One of the great things Bora did in association with the most recent North Carolina Science Blogging Conference was host a series of interviews with various attendees on his blog (myself included), all of which are well worth reading. So, I thought I'd turn the tables a little bit and get Bora to answer many of the same questions he posed to his various subjects.

I'd like to thank Bora for his enthusiastic, insightful and fun responses. Enjoy!


Welcome to the Confessions of a Science Librarian. Would you, please, tell my readers a little bit more about yourself? Who are you? What is your scientific background?

I grew up in Belgrade, Yugoslavia (now Serbia), reading books and riding horses since an early age. I majored in biochemistry and molecular biology in high school, then went to vet school with the intent to specialize in equine medicine. In 1991, I sold my horse and saddle and bought a ticket -- train to London, then plane to JFK. The war started a week later, breaking the country into several smaller pieces.

After a summer in Hendersonville, NC, working in a summer camp, and about a month in Boston and New Hampshire, I came back to North Carolina, to Raleigh, to work in a horse barn while dealing with the Immigration bureaucracy. On my first day in Raleigh I met Catharine who, a year later, became my wife. We have two kids -- a son and a daughter -- as well as a dog and three cats. We moved to Chapel Hill five years ago and love it here.

My transcripts from the vet school in Belgrade did not count for anything here, so instead of just finishing up in a year or so I would have had to start all over again. Instead, and after talking to horse vets at the barn for a couple of years, I decided that the situation here is quite different than in Yugoslavia. On one hand, the equine veterinary field is quite competitive, leaving little choice as to the location where one has to move to. On the other hand, one can actually do top science in the USA and biology was always my first love.

My interest was always in evolutionary biology, but I was often dismayed with some of the theoretical stuff that seemed to ignore the way the organisms actually work. My vet-school background, heavy on physiology, made it pretty easy for me to get into the NCSU Zoology program where I could integrate physiology, behavioral biology and evolutionary thinking into a single project. I did my MS on the physiology of circadian rhythms and photoperiodism in Japanese quail with Dr. Herbert Underwood, one of the pioneers of chronobiology, and continued with my PhD work in the same lab expanding both down to the level of the molecules and up to the evolutionary context. As you know, I have not defended my Dissertation or published any of that work yet...

After almost ten years in grad school (and after three deaths in the family in succession) I became depressed. The political situation in the USA was depressing as well. I spent more and more time online, reading and commenting on political blogs (including on the Edwards campaign blog), and less and less time writing my thesis. After the 2004 election, I got tired of political blogging and started blogging about science on a new blog instead, with immediate success (my very first post on the science blog got many thousands of hits from BoingBoing and others within the first day of the blog's existence!). In 2006, I got invited to move my blog to Seed ScienceBlogs.com. The rest is history.


What do you want to do/be when you grow up?

When I was a kid I had this great idea to be the first person to win both an Olympic medal and a Nobel prize. I am older and wiser now. Four years out of the lab, and fifteen years off the horse, the childhood dreams are over. And last time I checked, dealing with comment trolls does not qualify for the Peace prize. Jobs come and go. Passions come and go. But passion for making the world a better place for our children never goes away. I want to do whatever I can toward that goal. And, of course, be happy with my family and have lots of friends.

If Janet Stemwedel is the Cool Aunt of the science blogging community, you have to be the Crazy Uncle (only in the best way, of course). No one is a bigger supporter and cheerleader for the science blogging community. Can you explain a little the inspiration that's led you to edit an anthology series and organize a couple of conferences around this community? And what's next!?

I guess I am a gregarious type. Also, while blogging for a few years I have looked at the ways by which blogs get recognized and become popular, how top groups get entrenched and how much more difficult it is to make a break now than it was just a couple of years ago. So I feel an obligation to find and promote good new blogs as much as I can.

I have also quickly realized that I have made many good friends online and in many cases their own writing resulted in me knowing them better than many people I know in the meatspace. Meeting an online friend in person is like meeting an old childhood friend after a long break. No need to go through the rituals of "getting to know each other", you just hug and continue -- off line -- the conversation that started online. And having met in the real world, we understand each other better online afterwards (and are likely to be nicer to each other). One reinforces the other. There is something particularly strong about friendships that happen both online and off line. And this is something that Anton Zuiker has recognized a long time ago and showed us all, through meet-ups and conferences, how cool and powerful this idea is.

Thus, wanting to get my online friends, the science bloggers, together was a natural next step. And the way to do it was to organize a conference. And then another one. And we are working on the next one already. The idea is not just to have a giant meet-up where science bloggers get to share a beer, but to do something productive at the time as well -- put together people who probably would never meet otherwise: scientists, students, science bloggers, web developers, science journalists, science writers, science librarians, publishers, teachers and let the cross-fertilization of ideas produce magic!

There are still many people, scientists included, who are not very Internet savvy. Blogs have received quite a lot of bad press from threatened op-ed writers over the years as well, making people even more reluctant to check blogs out. We thought that one way to break this vicious cycle would be to present the best writing on science blogs in a medium that such people are comfortable with -- a book. The first anthology was a big hit and we hope that the second one will get even broader coverage and readership. And of course, we are already planning the third one.



Your real life job is Online Community Manager for PLoS ONE. Could you tell my readers the amazing story of how you go that job and what it consists of? Is herding cats a too gentle phrase to describe it?


My cats are marching in a perfect formation! Scientists....not yet... ;-)

When PLoS ONE was launched a year ago, on the new TOPAZ platform that incorporates readers' commentary, PLoS decided to hire a manager for the online community. Liz Allen was doing the search and, among other things, she sent e-mails to people who could potentially help identifying the right person, i.e., someone with both a scientific background and an experience online. One of the recipients of her e-mail was Anton Zuiker, my friend and co-conspirator in various local blogging activities, including the Science Blogging Conference and the anthology. Anton immediately forwarded the e-mail to me insisting I apply right then and there. Well, it was Friday night, so I thought I'd spend a weekend thinking about it, talking to my wife, fixing my CV, then applying on Monday morning. But, being a blogger, I could not resist posting the job description on the blog and asking my readers to let me know if this job was right for me or if I was just fooling myself. The readers started piling up in the comments, urging me to apply and urging PLoS to hire me. One of the comments, on Saturday morning, was from Chris Surridge, the Managing Editor of PLoS ONE, who wrote: "So should we take this blog post as a formal application?" The rest, as they say is history. So yes, I got the job in the comment thread of my own blog. Who said blogging is bad for your career?

So, my job is primarily to try to get people to post comments, notes and ratings on PLoS ONE articles. This means I have to keep making friends -- online and offline -- in the scientific community, to educate about Open Access, about PLoS, about TOPAZ, etc. I also manage the PLoS Blog, use my own blog to inform my readers about news from PLoS, and I sometimes evangelize OA at meetings.


When, how and why did you become a believer in Open Access publishing? In discussions of Open Access on science blogs, at meetings, between scientists and publishers, most people talk about Gold, while sometimes we librarians seem to prefer the Green approach to Open Access. Given the recent Harvard announcements about the Green approach, what's your current feeling about the balance between Green and Gold?

Back in grad school I was a fanatical downloader and reader of scientific papers. I read papers old and new in my field, in several related fields, and in some unrelated but interesting fields. I read, carefully, several papers per day. Then, a few months after I left grad school and started science blogging, my password expired for the school library and suddenly I realized what I never thought of before -- papers are actually NOT free and available for everyone to read. And I needed my daily dose of papers, both for blogging and for my, at the time, illusion of writing a Dissertation. I had to resort to begging friends for PDFs. When I look back, even to the early days of my science blogging, more and more of my blog posts were about papers in OA journals, mainly PLoS Biology (to which e-mail I was subscribed from the very beginning of the journal's existence).

I have mixed feelings about Green approach to Open Access. On one hand, it is a Good Thing -- papers previously unavailable become available for everyone to read. This is definitely an improvement over Toll Access. On the other hand, I have two main problems with it. First one is technical/practical: papers deposited in many places are more difficult to find and papers deposited with different formats are hard to machine-mine for data. I think all the papers should be in the same format, searchable from a single place and interconnected. Second problem I have is tactical/psychological. Settling for a semi-Good solution will slow down the movement towards the Good solution. Many people will be smugly satisfied with Green and will be hard to recruit to fight for Gold.


How do science blogs fit in the entire ecosystem of scientific publishing, communication and education?

Ah, we had two conferences on this question and we are not sure we have the answer yet! Every now and then, the science bloggers do a round of navel-gazing: what is science blogging (see the discussions from 2006 and the 2008). I could probably make this interview really long by writing a treatise on this, but let me try to point just at a couple of main functions, keeping in mind that every blogger has somewhat different motivations, methods and goals for blogging.

Science blogs are an educational resource. Some are actually used as teaching tools in the classrooms, while others are open to everyone (see, for instance, the series of Basic Concepts). Google loves blogs and many science blogs have high traffic and high ranking in search engines. This brings students (and teachers and other interested people) to science blogs when they search for scientific terms and concepts. My posts with the greatest longevity (and total traffic over time) are my educational posts, e.g., my BIO101 lecture notes.

Science blogs remove filters. A scientific paper is usually dry, dense and difficult to read. Most people outside of the particular field need some level of translation from Scientese into English (or whichever other language). Traditionally, this is the job of the Press Officer at the researchers' institution, often a person who does not have the requisite background in that scientific discipline and may thus make mistakes. The press releases are then picked up by journalists who write their articles based on these. They also usually do not have scientific background and find it difficult to read and understand the actual scientific papers. Thus, they add another step in translation which may, and often does, distort the meaning of the published research. Science bloggers are scientists and they tend to write about the research in their area of expertise (as I would write about chronobiology papers and leave physics to others). They read the actual papers. They tend not to make mistakes. And, as only a small proportion of scientists write blogs, the science bloggers are self-selected for love of writing -- so, at least after a few months of doing it, they become very, very good writers, often as good (or better) as the professional science journalists. And, as they tend to point out the mistakes in press releases and media articles, they keep the journalists' feet to the fire, making journalists better at their job in the process.

Science blogs protect science. Most working scientists do not have the time, energy and inclination to actively fight against various pseudoscience and anti-science movements. Many science bloggers do. And, as blogs tend to have high search-engine rankings, their responses to such attacks on science usually show up higher than the original attacks. Every time someone says something stupid or pernicious (for personal, financial, religious or political reasons), a chorus of science blogs dissects the quasi-argument and replaces it with correct information. This is what people will find if they search the relevant terms.

Science blogs are starting to change the way science is done. The examples are few for now, but Open Notebook Science, i.e., the publication of daily lab notes on a blog or a wiki (the way, for instance, Jean-Claude Bradley does it), is slowly gaining adherents. Sooner or later, hypotheses and data published on blogs will routinely get cited -- I have published both hypotheses and data on my blog before, and I had a blog post cited as a reference in a paper. In the other direction, scientific papers (like those published in PLoS journals) enable bloggers to leave trackbacks. This will become more and more frequent in the future.


How is a scientific paper going to look in 20 years from now? How is that going to affect the way scientific research (and teaching) is done?

It is hard to make predictions (although I did before), especially with such temporal precision -- things may happen much faster or slower than I think. It depends on the state of science in 20 years -- its global size and power, its global distribution (will the US science, with its US-specific culture, still be dominant in 20 years?), the technological breakthroughs and societal/political environment.

Most scientific disciplines go through cycles. A new technology (microscope, telescope, computer, gene-sequencing machines) suddenly allows people to gather previously intractable data. A whole industry develops around this new technology and over some years or decades, mountains of data are produced, yet the analysis and understanding of data is still quite superficial and preliminary. So the field swings to the other part of the cycle -- data analysis and interpretation and construction of new theoretical scaffolds, also a time for bitter theoretical battles within the discipline...until it is settled, by which time usually there is a new technological invention that allows for collection of new kinds of data and the cycle moves on again.

Right now, some fields, e.g., astronomy and genomics, are in the data-producing phase. Much money and manpower is dedicated to the production of enormous amounts of new data, with little time to stop and think about them. So, it is in the interest of researchers to make the data available to others for analysis. Thus, they are dumped online (where else? reams of printer paper?). Is publication of a new genome a scientific paper? It is just a lot of raw data, after all, with minimal and highly formalized Introduction, Methods and Discussion sections.

My prediction, probably false, but I'll go out on the limb here, is that a scientific paper of the future will be a work in progress -- with different people with different skills and talents contributing to a body of work sequentially: one has the idea, another turns it into a hypothesis, another designs the experiments, another runs them, another analyzes the data, another visualizes them, another interprets them, another places several such pieces of work together into a historical and philosophical context and finishes writing the "paper". The bits and pieces of it are independently searchable and citable and they are all interconnected by links until the final version is put all together in one place. After all, science as the work of a lonely genius is pretty much a myth -- it has been, for the most part, a very collective endeavor. The readers of the paper then keep adding their commentary, links to subsequent "papers," etc. The unity of the paper -- a single date, journal, volume, issue, page -- will be gone. All of science will become interdisciplinary and interconnected.


Bora -- the question that everyone wants to know the answer to: how do you manage to be such a prolific blogger and still hold down a job, edit anthologies, organize conference and maintain a life outside all that stuff.

It helps that most of it is a part of my job. I love my job, I love blogging, I love learning, and I love making friends -- and all of it is interconnected in my life right now. I do not sleep enough (but I do, every night, despite rumors to the contrary), I do not go out to commune with nature enough, and, unfortunately (and that HAS to change), I do not find enough time any more to read books as much as I used to.


When and how did you discover science blogs? What are some of your favourites? Have you discovered any new cool science blogs while at the Conference?

Since I started as a political blogger, it is no surprise that the first blog I encountered was The Intersection, at the time when Chris Mooney was starting to write his material for The Republican War On Science. His blogroll then led me to Pharyngula, Deltoid and a few other science blogs. After that, by jumping from blogroll to blogroll, as well as through blog carnivals, I discovered hundreds of others.

It is impossible any more (for at least a year now) to keep up with all of them, so I tend to rotate them -- some I check daily for a few months, then move to others, while checking the others only sporadically. I'd love to have a thousand Favourites (just check my blogroll!), but it is just physically impossible. I read all of my SciBlings pretty regularly (it is easy by checking The Last 24 Hours page), visit my old friend Archy just to say Hello every morning, check Peter Suber for professional reasons, and enjoy the fresh new young voices, e.g,. that of Pondering Pikaia or Laelaps. Like most of my interviewees, I encountered the delightful Inverse Square Blog at the Conference, as well as The INFO Project blog, the OpenHelix blog and will keep an eye to see how Space Cadet develops over time.


Is there anything that happened at this Conference -- a session, something someone said or did or wrote -- that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

It's hard, when you are the organizer, to quit worrying about the organization, choose a session and settle down with a full focus on the conversation. I actually had to watch the videos and read the blog posts afterwards for most of the sessions. In my mind, the most important development is the realization, reached by both sides I think, that former adversaries, the professional science journalists on one side and the science bloggers on the other, are really on the same side and need to find ways to collaborate.

Another focus for me, during the entire year of organization as well as during the meeting, was finding the ways to fully include people who traditionally were not invited to the table when scientists talk -- not only concerning gender and race, which are important, but also age and formal qualifications, e.g., undergraduate and high school students, writers, journalists, amateur naturalists, middle school teachers, elected officials and parents. I think that the Conference was quite successful in those goals, but I am already concocting plans for making the ScienceOnline09 even more inclusive if I can.


It was so nice to finally meet you and thank you for the interview.

It was great meeting you, too. It was a pleasure. See you next year at the conference.

March 11, 2008

Head exploding

Sometimes it's hard to believe all the stuff you find on the Web. I like to think of my self as a cautious utopian, but some people just go a bit too far in either direction for me.

Is the Web Different? by David Weinberger

The question "Is the Web different?" is actually not so much a question as a shibboleth in the original sense: The answer determines which tribe you're in.
The Web utopians point to the ways in which the Web has changed some of the basic assumptions about how we live together, removing old obstacles and enabling shiny new possibilities.
The Web dystopians agree that the Web is having a major effect on our lives. They, however, think that effect is detrimental.
The Web realists say the Web hasn't had nearly as much effect as the utopians and dystopians proclaim. The Web carries with it certain possibilities and limitations, but (the realists say) not many more than other major communications medium.

I think that this is a pretty useful analysis, one that lets us analyse where people are coming from, including ourselves. Like I said, I tend to be a cautious utopian, but perhaps a better description is a contrarian utopian. I tend to try and present the utopian perspective to dystopians and the dystopian perspective to utopians.

Weinberg obviously falls on the side of the most starry-eyed utopians.

But I don't want to leave it at that happy, liberal conclusion because it is, I believe, incomplete. The fuller statement of the conclusion should include: It is vital to have realists in the discussion, but they are essentially wrong.

*snip*

And we need lots and lots of them. There is so much to invent, and the new forms of association that emerge often only succeed if there are enough people to embrace them.

Web realists perform the vital function of keeping us from running down dead ends longer than we need to, and from getting into feedback loops that distort the innovation process. For those services, we should thank and encourage the realists. But we should also recognize that beyond the particulars, they are essentially wrong.

The contention among dystopians, realists and utopians is is a struggle among the past, the present and the future. The present is always right about itself but — in times of disruption — essentially wrong about the future. That's why we need to flood the field with utopians so we can be right often enough that we build the best future we can.

Needless to say, as a pure contrarian I find Weinberger needlessly dismissive and antagonistic here. I firmly believe that utopians should see realists as their natural allies, not their implacable enemies. Calling people that are mostly on your side wrong all the time does nothing to build the kinds of social networks and collaborative webs these utopians seem to want us to think that they're all about. A little humility can go a long way.



We've Got a Monster on the Loose: It's Called the Internet by Dan Greenberg.

Greenberg is the science policy writer on The Chronicle's group blog Brainstorm
Has there been an uptick in bizarre and pathological behavior since the Internet became a common household implement over, say, the past 10 years? There’s no way of untangling the Internet from the many other elements of society. But one might speculate about the soaring consumption of antidepressants, a reported increase in suicides among middle-aged men, and several spectacular mass murders at universities. Violent online games, pornography, and detachment and isolation from human contact come easily to the Internet user. Is there a connection? No one can say for sure, but the possibility can’t be dismissed.

Like all technologies, the Internet is employable for good and bad, and where it is applicable to benign purposes, it can be uniquely useful. But it is easily adaptable to mischief and worse. By many accounts, it has spawned an epidemic of plagiarism among college students — and an ensuing cat-and-mouse game with professors sifting their prose online. Identity theft is another gift to online malefactors. And sheer confusion — deliberate or inadvertent — on important public matters easily flourishes on the Internet.

Holy crap. What codswallop. It's a shame that Greenberg is the closest they have to a science gal/guy. He doesn't generally seem to like science or scientists or the internet or technology of any kind. Couldn't they find, like, a scientist to contribute? Science is part of Higher Education, after all.


The Ultimate Conference Attendee by Will Richardson.
It's great that this new-fangled web can let us share our thoughts and follow the thoughts of other so easily even though they may be georgraphically very far from us. I know that there's very little I enjoy more that audio or video from some far flung conference or meeting that I couldn't attend. I do conference summaries on my blog because I think others might find them useful and appreciate it when others do the same for sessions I couldn't attend.

Now, Will Richardson is a noted thinker in edcational technology, especially in the pedagogical uses of the read/write web. I often find his highly utopian musings provocative and instructive. But...
Wondering what future conference organizer is gonna get smart and only allow attendees who:

  • Have their own Ustream channels and broadcast live facial reactions of attendees as the session is in progress
  • Can Tweet out the best quotes, engage in lively back channel repartee, and live blog the session to their own sites at the same time
  • Create a VoiceThread story of the presentation within 10 minutes of finish by incorporating photos taken during the session and uploaded to Flickr, adding voice over narration to contextualize the event, and soliciting video comments from virtual attendees
  • Put together a wiki page for the session that collects dozens of various RSS feeds compiled from keyword and tag searches on the presenter’s name, the general topic, del.icio.us bookmarks, YouTube videos and more
  • Create a Google Map that identifies where all of the virtual attendees live and helps them upload photos of themselves watching the UStreamed, Tweeted, VoiceThreaded, wikied presentation in progress.
  • Conduct a live Skype call with other experts who challenge the ideas being presented and scream out provocative and borderline insulting questions
  • Have their own conference space in Second Life where live video and audio of presentation is being streamed and where they have organized a post session social featuring virtual local microbrews and coffees

Notice how he says "only allow attendees who..." What, so my money isn't good if I'm not on Twitter? Weinberger meet Richardson, Richardson meet Weinberger.



A Call for Slow Writing by Lindsay Waters.
I sort of have the impression I should be agreeing with Waters on this one, but ironically this is one of the most scrambled and unfocused "essays" I've read in a while.
What I’m saying is that the first step to re-establishing the essay as the standard in humanistic writing is to reinvigorate the sentences we write, so that, when one reads an essay, one feels it. One feels it the way one tastes — and here I’m going global — a good curry. It really sets you back. Or maybe forward. Style, maniera, modo is what we readers demand. The humanists of the Renaissance knew the Romans had the ability to put sentences that had concinnitas, but that their ancestors in what we call the Middle Ages had lost that ability. When the Ancients constructed the Arch of Constantine, it stayed together for centuries, even though neglected. Concinnity — what a splendid word!

*snip*

What an outrage! I remember the would-be contributor whom we were demanding more of who said “But I’ve written the perfect New Historicist, feminist, deconstructionist essay. You dare not tamper with my very self and voice. And we dared not tell Professor Polonius that he did not have any writing voice at all. You cannot be comical-pastoral-tragical (I am playing on what Polonius says at Hamlet 2.2.397.) and speak in any tongue in which humans have spoken. We nearly turned down an entry by one of the chief editors of that book. With the Marcus/Sollors I confess to having stacked things towards readability by making one of the founding editors of Rolling Stone be one of the two editors-in-chief of the volume. Guilty as charged. The way I have set up the Marcus/Sollors is all around the essay. The book is a collection of 220 essays that resonate in surprising ways so that the whole is much greater than the sum of the parts, but each individual part is a free-standing essay.In the making of this book I have pursued the essay so strongly that I have made it function in a new way like an individual instrument in Alexander’s Ragtime Band.

I know I'm only a simple science type, but, Huh?


My apologies for the crankiness of today's post. The snow must be getting to me.

March 8, 2008

Edvard Munch: The Canadian Years

Today's Globe and Mail editorial cartoon:



A sentiment that I'm sure is shared by many a Canadian on this snowy Saturday morning. The boys and I will be heading out for the first round of shovelling after lunch.

March 7, 2008

Friday Fun: Transylvania 6-5000 Edition

Transylvania 6-5000 is one of my all-time favourite Bugs Bunny cartoons. It's hysterical, especially the part where Bugs keeps transforming Drac into various permutations and combinations of vampire & bat.

Watch it here on YouTube and LOL!

March 6, 2008

See Jane Compute on ScienceBlogs

Complain and ye shall be rewarded...immediately.

Just yesterday I was mentioning that I didn't think computer science and engineering were particularly well represented on the ScienceBlogs and what happens? Today one of my all-time favourite computer science bloggers has made her debut on the science blogs!

A hearty congratulations to Jane of See Jane Compute!

I'm especially pleased, of course, because I've been following Jane's adventures for a very long time. I was particularly pleased and proud that she agreed to be my very first interview subject.

March 5, 2008

ScienceBlogs, science blogs, blogs about science, blogs with some science

So which one am I?

Late to the party as usual, this post is a response to the recent kerfuffle over at ScienceBlogs about a post at the BayBlab blog that was highly critical of the effect the Seed sponsored ScienceBlogs platform is having on science blogging in general.

The original post brought up a lot of issues, like being traffic whores, insularity, cliquishness, lack of focus on science and the influence being paid has on the ScienceBloggers.

If you examine the elephant in the room, ScienceBlogs, the trend is maintained: politics, religion books, technology, education and music are tagged more often than biology or genetics. This suggests that their primary motives are entertainment rather than discussing science. Why? Because it pays. Seed Magazine and the bloggers themselves profit from the traffic. That's right, Seed actually pays these bloggers for their posts. And the whole ScienceBlogs thing is a little incestuous, they really like linking to each other, but not so much to the little blogs. I'm afraid gone is the amateur blogger, and in is the professional gonzo science journalist. Might as well read Seed magazine.

As you can imagine, this provoked a storm of protest, with 70+ comments on the post itself and a lot of commentary on other blogs, especially from the ScienceBloggers themselves.

Ultimately embarrassed by the silliness and pettiness of their post, the BayBlabers recanted and said it was all just a experiment in provoking a reaction. Or something.

Two of the most reasoned commentaries on the ScienceBlogs site were, not surprisingly, from Adventures in Ethics and Science and A Blog around the Clock.

Now, I'm not going to comment too directly on the whole thing -- there's been enough spleen vented and rants ranted already. I do want to say, however, that I found the Bayblabs posts themselves to be rather juvenile and self-serving -- a pathetic attempt to garner traffic and get some notice while actually pretending to criticize those impulses in others. Not too surprisingly, the author of the posts is calls him/herself Anonymous Coward. Also not too surprising that the site is a written by a bunch of grad students. Kind of embarrassing that they're Canadian grad students, though.

Well, I've already rambled a fair bit here, so what was I trying to get at? In the post I mention above at Adventures in Ethics and Science, Janet Stemwedel asks herself a bunch of questions about being a ScienceBlogger/science blogger/blog about science/blog with some science that I thought would be useful to explore for myself. It's a chance to talk about why I do what I do, what I think the purpose of science blogging is and what I think about the 800 pound gorilla of the science blogging world -- ScienceBlogs. A few of the other ScienceBloggers have done the same thing. I don't navel-gaze all that much here, but some introspection about purpose and intent is always good for the non-supernatural soul.

(Note that a couple of the AiEaS questions aren't really relevant for someone not part of the ScienceBlogs platform.)


1. Why do you consider this blog a science blog?

Hmmm. I don't really consider myself solely a science blogger as I also have one foot firmly in the librarian blogger community. I'm also neither a practicing scientist nor a science journalist or communicator of any kind and as such I don't post much about new developments in science or technology. I don't really post that much about the battle against creationism or global warming denialism.

So why do I so strongly identify with the science blogger community of I'm at best peripheral to the main preoccupations of the mainstream science blogging community? Partly because I love science and enjoy the company of science people. Partly because as a librarian serving a scitech community I think it's part of my job to know what makes scientists and engineers tick and reading their blogs is an important part of that. And partly because I do post quite a bit about resources I find that help me understand the culture of science. And being a recovering software developer, I also post a lot about the culture of computer science and information technology.

When someone says, "I may not be able to define a science blog but I know one when I see it!" I think they could look here and see a science blog.


3. Why do so many bloggers at ScienceBlogs write about stuff besides science?

Because they're human. If you don't like the cat blogging or the political blogging getting in the way of the science blogging, then just ignore those posts or read another blog. Blogs are a lot of different things to a lot of different bloggers and we all just have to do what keeps us going.

Now, I'm not one to talk. I post relatively little on non-science librarian topics on my blog. I post very little on my personal life, nothing on politics or religion and only a handful of posts on popular culture, mostly as part of my Friday Fun series. But very little isn't nothing and I expect that the more personal topics are also interesting to my readers because it allows us to build a more complete and human relationship and for the parts of the community we share to be fuller and deeper.

Speaking for myself, this blog reflects my personality and my passing interests at any given time. That's going to include non-science librarian stuff too. If I tried to cut off the non-science librarian stuff I would be much more likely to lose interest in continuing blogging at all.


4. ...[Do] you make all your blogging decisions on the basis of what will drive traffic?

Only very occasionally. The vast majority of my posts serve my primary purpose -- to explore and report on the life of a science librarian in the 21st century, including trying to understand how scientists communicate.

The only case where I've really been influenced to post based on anticipated traffic was the series of year's best science book posts from this past fall. When I did it spontaneously in fall 2006, it was unexpectedly extremely popular so when fall 2007 came around, it seemed like a good idea to go for it again. And not only for traffic, but it seems that the posts were appreciated by people looking for good science books.

In other cases, I post whether or not I anticipate a huge amount of traffic. My interview series is a good case in point. The big one was the Timo Hannay interview, which has gotten over 1000 page views. But the rest only add to a bit more than that all together, averaging 200-300 page views. But I keep doing them because I think they are extremely valuable both for me and for my core readership who are probably getting them via RSS.

Of course, this question also begs the question of the purpose of popularity amongst bloggers. In other words, why do I want my blog to be popular and get lots of hits? As an academic, I function in a reputation economy. If my blog makes me somewhat more famous than I would be without one, then opportunities will come my way. Now, putting it all in perspective, fame amongst science librarians is extremely relative. But nevertheless, my blog has earned me a number of important invitations and engagements and a couple of free books to boot.

Speaking of perspective, in the 12 months ending February 29, 2008, this blog received 47,547 page views and 33,655 unique visits (according to Google Analytics). My three most popular posts over the 12 months have been only slightly over 1000 page views.

And sometimes you get surprise posts that attract a lot of hits. For example, my recent post on Jeff Healey has attracted a few hundreds hits making it my most popular recent post.


5. Do the bloggers at ScienceBlogs think they're better than all the other people who blog about science? Do they think their traffic or incoming links make them the best?

At 71 blogs and probably 80+ individual bloggers, I'm sure there are a couple who think they're better than the rest of us, who blog for the sole purpose of being famous and raising their profile. I can think of a couple and I'm sure you can too.

On the other hand, who really cares. I read the blogs I like and ignore the ones that annoy me. Not only that, anyone with a lick of sense would have to recognize that the prestige of the ScienceBlogs community has attracted a disproportionate number of the best science bloggers, nurtured them, paid them a few bucks, given them a higher profile and encouraged them to keep on blogging. That's a very good thing.


6. Why so many blogs about biology at ScienceBlogs? Why aren't there more blogs about chemistry, or astronomy, or lepidoptery, or gastroenterology, or ...?

In my mind, this is a legitimate criticism of ScienceBlogs. They are quite overweighted with life science blogs (I include neuroscience loosely under this banner), most probably out of proportion to life science blogs among the whole population of science blogs. Engineering and computer science are among the least well represented areas. I have never been shy about pointing this out to SB either in their surveys or in person (Hi Ginny!).

Does this affect my appreciation for what they are doing? Only slightly. After all, they are a private company and if they think their current mix of blogs is going to drive the most traffic and make the most money, well, so be it. I believe they've also made efforts to balance things out a bit better and are working towards that goal.


7. Why don't ScienceBlogs bloggers ever link to blogs outside ScienceBlogs.

Err. This is absurd. As far as I can tell, most if not all ScienceBloggers make an effort to link to other blogs. I've benefited from some of the linking myself, mostly from Bora but also by being on a couple of blogrolls (274 referrals in the last 12 months). I myself am probably not as diligent in supporting other blogs as they are, on average.


8. Are all the ScienceBlogs bloggers BFFs?

ScienceBlogs is a lively community and disagreements and disputes do arise from time to time. The whole Framing of Science thing is a good example as there is a lot of both light and heat generated whenever it comes up. In fact, I think there are one or two of ScienceBloggers that are roundly despised by many of their associates.

But for me, I see the close knit nature of the community as a plus. I enjoy peeking inside and seeing the interactions amongst this diverse array of colleagues. It's fun and compelling, making the community as a whole more useful and interesting. And since all the blogs allow comments, no one is excluded from participating in the family discussions, if only as cousins rather than siblings.

Have I ever felt excluded or jealous of the interactions or sense of community? Possibly slightly on a very few occasions. There's a fine line between cliquishness and community and I think that they generally stay on the right side. At the conference, I certainly didn't notice any undue amount of cliquishness. People who already know each other (f2f or virtually) will always stick together a bit more than average, but that's normal and understandable.


(Disclosure: Is all this just me sucking up so they'll invite me to join the ScienceBlogs collective? Not at all. I've never been approached to join nor have I ever approached them. I'm not particularly interested in being hosted nor do I think I'd be that great a fit with their current stable. I imagine that if they did approach me, I'd give it serious thought and do what I thought was the best for me and my online presence.)

March 3, 2008

Jeff Healey

A sad day today in the Canadian music world. Blues/Rock/Jazz guitarist Jeff Healey died yesterday after a long battle with cancer. He was only 41.

I first saw Healey in concert about 18 years ago at the Montreal International Jazz Festival -- he was opening up for a more established blues star. When he was announced, I'd never heard of him before so didn't know what to expect. Needless to say, he lit up the place like never before, one of the most electrifying performances I've ever seen. He totally stole the show from the headliner who set seemed tame and sedate by comparison. After the show, I tried to remember the name of that amazing guy but nobody seemed to remember. I only found out the next day in the review in the paper.

He has a blues rock album coming out in a month or so, the first since 2000. He'd been mostly recording jazz in the last number of years.

February 29, 2008

Friday Fun: Science Seminar Attendees

Hysterically funny post a while back at Evolgen giving some humourous impressions of the kind of people that end up at faculty or other seminars. We've all been to seminars and talks like this, where the head crank seizes the floor, in fact we may have even been some of these audience members.

A taste:

The grand advertiser: No matter how unrelated, insignificant, and uninteresting this guy's research is, he'll find a way to link it to the topic of the seminar. And no one will give a shit. The speaker will pay lip-service to the question, but we've already died a little inside because the grand advertiser has wasted our time advertising the crap his lab studies.


And many more are suggested in the comments.

Any library-specific seminar attendees? The Piner for the Good Old Days of Card Catalogues comes to mind, but those tend to be more mythical than actual, in my experience.

Programmers at Work Revisited

Susan Lammers's Programmers at Work is one of my all-time favourite books of any kind. It's basically a series of interviews with the pioneers of the personal computing industry, from Charles Simonyi to Bill Gates and Bob Carr and Andy Hertzfeld. It was published way back in 1984 and has been pretty hard to find since then. I still have my copy and treasure it immensely.

If you're jealous of my good fortune, you no longer have to be. As a way of gaging interest for a follow up volume, Lammers has begun posting the old interviews on a blog, starting with Charles Simonyi.

I personally would love to see a similar volume featuring today's pioneers.

For those that are interested, it's worth noting that Out of their Minds: The Lives and Discoveries of 15 Great Computer Scientists by Dennis Shasha and Cathy Lazere is similar in intention to Lammers's book and also very, very good. via Wordyard.

February 27, 2008

We-think: The Power of Mass Creativity

Another in the recent series of posts on books I want to read: We-think: The Power of Mass Creativity by Charles Leadbeater.

The Amazon.co.uk summary:

Society is based not on mass consumption now but on mass, innovative participation - as is clear in phenomena from Wikipedia, Youtube and Craigslist to new forms of scientific research and political campaigning. This new mode of 'We-think' is reshaping the way we work, play and communicate."We-think" is about what the rise of these phenomena (not all to do with the internet) means for the way we organise ourselves - not just in digital businesses but in schools and hospitals, cities and mainstream corporations. For the point of the industrial era economy was mass production for mass consumption, the formula created by Henry Ford; but these new forms of mass, creative collaboration announce the arrival of a new kind of society, in which people want to be players, not spectators.This is a huge cultural shift, for in this new economy people want not services and goods, delivered to them, but tools so they can take part. In "We-think" Charles Leadbeater analyses not only these changes, but how they will affect us and how we can make the most of them.

Just as, in the 1980s, his "In Search of Work" predicted the rise of more flexible employment, here he outlines a crucial shift that is already affecting all of us.

Sadly, it doesn't seem to have a publish date outside the UK.

L'Oréal-UNESCO For Women in Science Awards

Thanks to Nicolas Barnabe of Labelium for bringing the 2008 edition of the L'Oréal-UNESCO For Women in Science Awards to my attention.

Here are the 5 laureates:

  • Ada Yonath -- For her structural studies of the protein biosynthesis system and its disruption by antibiotics

  • Elisabeth Kim -- For elucidating the formation of a new class of RNA molecules involved in gene regulation

  • Ana Belen Elgoyhen -- For her contributions to the understanding of the molecular basis of hearing

  • Elisabeth Blackburn -- For the discovery of the nature and maintenance of chromosome ends and their roles in cancer and aging

  • Lidadh Al-Gazali -- For her contributions to the characterization of inherited disorders


A word to the wise -- most of the other pages that are part of the site are so jumped up on Flash and other crap that they're practically unreadable and unusable.

February 26, 2008

Winchester, Simon. The map that changed the world: Willliam Smith and the birth of modern Geology. New York: HarperCollins, 2001. 329pp.

I try and spread around the disciplinary love in my science book reading. Some physics, some math, some engineering, some biology, a lot of computing and cyberculture. And even some of the earth sciences too. Simon Winchester's The map that changed the world: Willliam Smith and the birth of modern Geology is essentially about map making. Map making, of course, partakes of several disciplines -- surveying, geography and, of course, geology. Willilam Smith's claim to fame is that he created the first geological map of England, maping the different strata of rock and fossils in way that had never been done before.

Since relatively little is known about Smith's life, the book sometimes alternates chapters between the scientific and social context of Smith's era (1769-1939) and the history of his map-making efforts. As well, most chapters also contain a lot of general historical information.

Chapter 1 sets the stage for some of the major tragedies and disappointments in Smith's life, a bit of a recap at the beginning. Winchester begins in earnest in chapter 2 with some of the general ideas and issues at play in the era. Chapter 3 gives the generally accepted ideas of fossils around 1800 and Chapter 4 the significance of canal systems to Britain at the time. Chapter 5 talks about Smith's first experiences with seeing strata while working in coal mines while chapter 6 is about his experiences surveying for the railroads. Chapters 7 and goes into the importance of the surveying work he did for canals in forming his ideas about how strata are formed and how to identify them.

In Chapters 9 and 10 Smith gets the idea for his geological map from agricultural maps of Bath and from work he did for drainage projects. Skipping to Chapter 12, the map is created and Winchester details the main problems Smith had in getting his project off the ground, including, in chapter 13, his betrayal by a colleague and the Royal Society. In chapter 14 Smith has to sell his fossil collection to settle some debts and ultimately, in chapter 15 he ends up in debtor's prison. Chapters 16 and 17 detail his life after prison, his long-awaited welcoming into the scientific establishment and his final years.

Overall, I would say the book lacks a little zip. It can drag in places and sometimes the extra contextual information seems a little too close to padding. A couple of things I really appreciated about the book are, first of all, it has a fine glossary at the back. Also, it is really useful to get the hardcover version of the book as the dust jacket folds out into a fairly large reprodution of Smith's map. As well, the list of sources and recommended readings is a valuable tool for collection development in the history of geology.

While this book might be a bit earnest for small public libraries or high school libraries, I think larger public library systems should have at least one copy of this book floating around their stacks in some branch or other. As well, any academic library that collects anything in the history of the earth sciences is going to find this book a necessary acquisition.

Free!

One of the eternal scientific constants in the world is what I call the Wired Cosmological BS Ratio. Every Wired article will be 1/3 unadulterated BS, 1/3 crazed hype and 1/3 thoughtful analysis. As a result, most Wired articles are actually too annoying to read all the way through, as something in the first couple of paragraphs will usually be enought to compell you to hurl the (virtual0 magazine up against the (virtual) wall.

Well, I took one for the gipper and actually read the entirety of Chris Anderson's article in the latest issue, Free! Why $0.00 Is the Future of Business. It's a taste of his upcoming book on Free and overall, I have to say it's pretty interesting. As usual, he's a little too glib about how easy it is to convert attention and reputation into cash -- easy to say for the Editor of Wired, U2, Prince or anybody else that actually made their reputations in the pre-free economy. But perhaps not as obvious or as easy to the rest of the planet.

In any case, first the BS, in the form of a couple of Free scenarios he throws out for consideration:

Scenario 1: Low-cost digital distribution will make the summer blockbuster free. Theaters will make their money from concessions — and by selling the premium moviegoing experience at a high price.

Scenario 2: Ads on the subway? That's so 20th century. By sponsoring the whole line and making trips free, the local merchants association brings grateful commuters to neighborhood shops.


Scenario 3: It's a free second-gen Wiii! But only if you buy the deluxe version of Rock Band.


I know, I know, we're all trying to decide which of these is the silliest. No one in their right mind who sees a movie for "free" but has to buy $20 popcorn as part of the deal or pay $15 for an actual comfortable seat will think of the movie itself as free. It's bait and switch.

And, right, Microsoft will pay $1 billion per year to sponsor the TTC. If Anderson had taken even a second to figure out how much it costs to run a transit system, he would have seen how absurd that is. As for the Wii example, even he admits these kinds of cross subsidies are new, so I'm not sure why he makes such a big deal of them.

And the Hype:
As much as we complain about how expensive things are getting, we're surrounded by forces that are making them cheaper. Forty years ago, the principal nutritional problem in America was hunger; now it's obesity, for which we have the Green Revolution to thank. Forty years ago, charity was dominated by clothing drives for the poor. Now you can get a T-shirt for less than the price of a cup of coffee, thanks to China and global sourcing. So too for toys, gadgets, and commodities of every sort. Even cocaine has pretty much never been cheaper (globalization works in mysterious ways).

It must be nice to live in such a black and white world, free from green house gas emmissions, sweatshops and the race to the bottom. Wal-Mart making everything cheaper is an example of the tragedy of the commons, not the virtues of free.

But there is some pretty good stuff too, picking up on my recent musings on the reputation/attention economy:
Enabled by the miracle of abundance, digital economics has turned traditional economics upside down. Read your college textbook and it's likely to define economics as "the social science of choice under scarcity." The entire field is built on studying trade-offs and how they're made. Milton Friedman himself reminded us time and time again that "there's no such thing as a free lunch.

"But Friedman was wrong in two ways. First, a free lunch doesn't necessarily mean the food is being given away or that you'll pay for it later — it could just mean someone else is picking up the tab. Second, in the digital realm, as we've seen, the main feedstocks of the information economy — storage, processing power, and bandwidth — are getting cheaper by the day. Two of the main scarcity functions of traditional economics — the marginal costs of manufacturing and distribution — are rushing headlong to zip. It's as if the restaurant suddenly didn't have to pay any food or labor costs for that lunch.

Surely economics has something to say about that?

It does. The word is externalities, a concept that holds that money is not the only scarcity in the world. Chief among the others are your time and respect, two factors that we've always known about but have only recently been able to measure properly. The "attention economy" and "reputation economy" are too fuzzy to merit an academic department, but there's something real at the heart of both. Thanks to Google, we now have a handy way to convert from reputation (PageRank) to attention (traffic) to money (ads). Anything you can consistently convert to cash is a form of currency itself, and Google plays the role of central banker for these new economies.

There is, presumably, a limited supply of reputation and attention in the world at any point in time. These are the new scarcities — and the world of free exists mostly to acquire these valuable assets for the sake of a business model to be identified later. Free shifts the economy from a focus on only that which can be quantified in dollars and cents to a more realistic accounting of all the things we truly value today.

Like I said, some interesting stuff. I look forward to reading his book when it comes out, I hope in some soft of free format. Afterall, it's my eyeballs he wants, not my money...right?

(BTW, I would be remiss if I did not mention Walt Crawford's selective demolishing of another aspect of the article. I would encourage everone to pick a part of the article and fisk away.)

Bora At My Blog?

No way am I crazy enough to try this.

February 24, 2008

Quammen, David. Natural acts: A sidelong view of science and nature. New York: Avon, 1985. 221pp.

Just so you all know I don't just read the brightest, shiniest, newest books. I also read some old classics too. And classic is just how I would describe this charming, wonderful book by well-known science writer David Quammen.

This is a collection of essays that mostly appeared in Outside Magazine and they fall squarely in the realm of nature writing. They're mostly short and to the point, a little on the sentimental side sometimes. Sometimes very pointed in their environmentalism, notable these days that environmentalists were active as far back as 1985, that it didn't start with Al Gore. Some of the creatures profiled are bats and cockroaches, the octopus and the crow, bison and grayling. Nice profile of paleontologist Jack Horner and Tycho Brahe. Fishing and swimming and traveling, all the things that make up good nature writing.

This is a great book to slowly meander through, either as a bedside book or an essay here and there riding on the bus to work (as it was for me). A good addition to the collection for any public library or for any academic science library that maintains a leisure reading collection.

Dunbar, David and Brad Reagan, eds. Debunking 9/11 myths: Why conspiracy theories can't stand up to the facts. New York: Hearst, 2006. 170pp.

This is one of those books that I picked up a the train station cheap remaindered books kiosk. I do that every once in a while, find a quick read for a long train ride. And this short book is certainly a short and involving read. It's an expansion of a long article in Popular Mechanics a few years ago which took at a bunch of different 9/11 conspiracy theories,, looked at the facts from a science and engineering perspective and decided if the theory had any real basis. Guess what? None of them did.

This may be a quick read, but it's still a very important one. There's a lot of stupid stuff on the Web, a lot of it pet theories about what really happened in New York, Washington and Pennsylvania. This book will, I hope, start the process of setting at least some of them straight.

What are some of the myths that are debunked? That not enough damage was caused to the buildings to cause them to collapse. That puffs of dust visible while the buildings were collapsing were the results of planned explosions. That nearby seismographs detected those planned explosions. That WTC 7's collapse was also the result of a controlled demolition. That the Pentagon's blast-proof windows could not have survived a real crash. That Flight 93 was shot down by jet fighters. Well, the list goes on.

And on that topic, in my opinion, are the myths effectively debunked? They certainly are. Some of them are so loopy that it's hard to even believe that some people out there give them any credence at all.

I would recommend this book without hesitation for all public, school and academic libraries.

February 22, 2008

Friday Fun: Hardboiled Edition

As regular readers of this blog know, I'm mostly a reader of sf, with forays into mystery and horror. Well, lately, I've been reading quite a bit more in the hardboiled and noir mystery genres than usual. And, being a librarian, I've been searching around the Web for related reading lists in the hardboiled, noir and general mystery fields. Nothing causes librarian hearts to go pitter patter more than a couple of good reading lists!

In any case, I thought I'd share what I've found so far:



Hard Case Crime have a good list of links. My York colleague Bill Denton also has a world of hardboiled goodness at RARA-AVIS.

If you know of any others, please feel free to share.

Interview at A Blog Around the Clock

Bora turns the tables and interviews me as part of his continuing series of interviews with people who were at the North Carolina Science Blogging Conference.

It was a lot of fun and a really great experience to be on the other side of the online "microphone." The one thing that has me a little conflicted is that he's interviewing so many people that I would like to interview for my series too ;-) Oh well, I'll probably wait a while before re-interviewing any of Bora's victims, which is probably good incentive to interview a few more people on the computer science side of things rather than concentrating on blogging/publishing.

In any case, check out the whole series of interviews, if you haven't seen them yet. They're all great and a fantastic source of new blogs to check out.

February 21, 2008

Here Comes Everybody: The Power of Organizing Without Organizations

Another cool looking book to read, this time by Clay Shirky!

Here Comes Everybody is about why new social tools matter for society. It is a non-techie book for the general reader (the letters TCP IP appear nowhere in that order). It is also post-utopian (I assume that the coming changes are both good and bad) and written from the point of view I have adopted from my students, namely that the internet is now boring, and the key question is what we are going to do with it.


And why don't we consider this an open thread for book recommendations -- fiction, non-fiction, library-related or not.

The Third Branch of Science?

I've often written about how all the various branches of science and becoming more and more computationally oriented. Computational biology, physics, math, geometry, chemistry and all the rest. Computational science is everywhere. Modelling and data analysis are everywhere. Bioinformatics is the hottest thing going these days.

An interesting post on the Wired Science blog Correlations where Michael Tobis writes about computational science as the Third Branch of Science:

Some people these days are saying that computing has become so important to science that it constitutes a third branch. Even though computationally intensive science is what occupies my time, I am not sure that this is the right way to think about it philosophically. To some extent computing brings the theoretical and experimental branches closer together.

There are some sciences where the experimental method is extremely limited. Earth sciences are among them, but the quintessential example is astrophysics. We simply can't afford to be monkeying around with stars to test our theories about how they work!

*snip*

In fields where experimentation and direct observation are limited, computational science is especially important. Computational science is about simulation. Once we know the equations which describe a physical system, we can program a computer with that description and watch the simulated system just as we would watch a real system.

This is a tradeoff; in fact our understanding is imperfect, so the simulated system won't behave exactly like the real system. (In fact, more often than not it doesn't behave even remotely like the real system, but you don't hewar about these back-to-the-drawing-board efforts. Perhaps it might be better if failures were better documented to prevent others from going down certain blind alleys repeatedly, but in general failed efforts are just abandoned.)

If the imperfect simulation looks somewhat like the observable parts of the real system, though, it has tremendous benefits. The model is perfectly observable. We can investigate phenomena in ways that could never be affordable to measure in the real world.

Worth reading the whole article.

National Engineering Week!

It's National Engineering Week next week, with the Ontario page here.

As usual, there's a nice supplement in the Globe and Mail, although the 2008 edition isn't up yet. As usual, lots of good articles including ones on Environmental challenges, Alternative Energy, Engineering in the Life Sciences, Auto Innovation, Robot Games, a couple of Engineering Careers and Engineering in Space.

Now that York's Engineering Program has been accredited, we actually figure quite prominently in the supplement. There's a nice ad and Prof. Spiros Pagiatakis gets quoted in the article on Environmental Challenges.

Not only that, but there's a a good chunk of an article devoted to Space Engineering projects at York. Projects by Profs. James Whiteway and Ben Quine are featured -- and a rather fuzzy picture of Ben with his thermal vacuum chamber.

February 19, 2008

Some other interesting books I'd like to read

Nothing like finding one book you'd like to read to suddenly get a whole bunch more popping up in front of your consciousness. All of these are reflections of the stuff I'm obsessed with these days, the conversations I'm having inside my own head.

Starting with the one from the last post:


And yes, I find it odd and somewhat disturbing that so many of the books I want to read are in the business section. Of course, if there's a book that you feel I should be reading, please drop a comment and let me know!

Also, related to the last post on The Future of Reputation, Michael Nielson pointed me to an article by Michael H. Goldhaber, The Attention Economy and the Net. Goldhaber also has a blog covering much the same territory.

The Future of Reputation: Gossip, Rumor, and Privacy on the Internet

Now this is a book I've got to read!

As anyone who's heard me speak recently, I'm thinking more and more about how the twin demons of attention and reputation are shaping our lives. It seems to me that we can use online attention to shape our online reputation and that this nebulous online reputation can shape the way things happen off-line.

It was Ricard Akerman's post several weeks ago on The Currencies of the Digital Realm that really crystallized these thoughts for me. As I've quoted in my last couple of presentations:

Attention is the first currency of the digital realm...
Reputation is the second currency of the digital realm...
To me this means that in the digital realm, you have to stop thinking that you're in the XYZ business...and start thinking that you're in the attention and reputation business.

And I think this is hugely important for libraries to be aware of. What we're really trying to do is build our reputations so we can get the attention of our faculty and students. Or are we using our reputations to get the attention of our patrons? Or is it a little of both? In a world where there are a million options for searching the scholarly literature, we need that edge to get our point of view heard.

So, what about The Future of Reputation: Gossip, Rumor, and Privacy on the Internet by Daniel J. Solove? From the author's web page, I can see that he has put the entire full text of the book online for free. Which is in itself a gambit to get our attention, to actually get us to read the book. Then, perhaps we'll buy it or invite him to speak at an event. Perhaps having a widely reviewed and commented upon book can help him build his academic reputation? It's all intermingled and cross-promoting.

The points he is trying to make are actually quite skeptical, worrying more about the damage to our reputations that can happen online rather than what we can do positively:
What information about you is available on the Internet?

What if it’s wrong, humiliating, or true but regrettable?

Will it ever go away?

Teeming with chatrooms, online discussion groups, and blogs, the Internet offers previously unimagined opportunities for personal expression and communication. But there’s a dark side to the story. A trail of information fragments about us is forever preserved on the Internet, instantly available in a Google search. A permanent chronicle of our private lives—often of dubious reliability and sometimes totally false—will follow us wherever we go, accessible to friends, strangers, dates, employers, neighbors, relatives, and anyone else who cares to look. This engrossing book, brimming with amazing examples of gossip, slander, and rumor on the Internet, explores the profound implications of the online collision between free speech and privacy.

Daniel Solove, an authority on information privacy law, offers a fascinating account of how the Internet is transforming gossip, the way we shame others, and our ability to protect our own reputations. Focusing on blogs, Internet communities, cyber mobs, and other current trends, he shows that, ironically, the unconstrained flow of information on the Internet may impede opportunities for self-development and freedom. Longstanding notions of privacy need review, the author contends: unless we establish a balance among privacy, free speech, and anonymity, we may discover that the freedom of the Internet makes us less free.

But it still looks to be an interesting and provocative book. Perhaps we're still waiting for a book to make the counter-argument, that the Web can be used to build and foster our reputation too. I have to admit, that Chris Anderson's upcoming book Free might just be what I'm waiting for.

February 18, 2008

Web 2.You recap

As I mentioned a few weeks ago, I was in Montreal this past weekend for a CLA Montreal Chapter/McGill SIS sponsored event called Web 2.You. It was a great event with lots of really terrific presentations. My session, on Blogging for Professional Development, went pretty well with lots of good questions and discussion. It was interesting that the audience seemed to want to talk about using blogs as a way to reach out to patrons as much as reaching out to each other. Hmmmm. Maybe next time.

In any case, for any of the session attendees who have your own blogs or were inspired to start your own blog after hearing the sessions, please let me know either by email (jdupuis at yorku dot ca) or in the comments so I spread a little link love.

For what it's worth, the Google Docs slides are here, as well as being embedded below.



I'd certainly like to thank Jocelyne Andrews and all the organizing "committee" for inviting me to speak; I had a great time and really enjoyed the chance to meet new people and talk about library stuff. As well, I was really happy that it turned out to be a mini-reunion for my McGill Library School class of 2000 as Will Meredith, Andrea Harland and Jeff Lilburn showed up!

So, you ask, what were the other presentations?

Is Boolean Dead? Researching and the New Web
by Rajiv Johal & Beth Dunning. A great session, focusing on what users today might be expecting when they see one of those empty search boxes. Strict boolean searches, like we librarians love so much? Or perhaps a more Google-like experience? We know from OPAC studies that the situation is a bit grim, and that users tend to use very short natural language queries. If our users prefer intuitive interfaces, wanting to always find some relevant very quickly, how do we make our choices relevant and fast? There's not clear definition of Search 2.0, but some ideas include faceted search and tag clouds, moving away from traditional boolean and more towards a Google or Amazon feel.

Visual search like Redzee gives previews and is family friendly. Human assisted search like ChaCha has paid guides to help with searches. Like Google CSE, RollYO allows custom configuring of sites to search. Drupal and Evergreeen are open sources ILSs. The Aquabrowser interface used by the UChicago and Queenslibrary.org is also very interesting in the way it sits on top of the ILS. Even academic databases like Factiva and Ebsco are using faceted and other search 2.0 features.

Some thoughts to take away: it's not about us, it's about adapting to our users needs. We should all just play around a little with these cool new tools.

A Second Life for your Library by Amy Buckland & Jan Dawson. A terrific introduction to what Second Life is and what's going on in the library world of SL. It's not a game, first of all, but a vitual environment. There are often as many as 55K people logged in at any one time. It's all user-developed. Who are "in-world?" Commerce, education (Harvard, McMaster) government, non-profits, health orgs, culture (U2, Suzanne Vega), news orgs (Reuters). Why should libraries be in-world? Educational orgs have moved in and libraries need to be there to support educational mission, it is another point of access for our users, we can also offer info that may be censored in user's countries. Some challenges: technology issues, need high speed; quite a long learning curve to get good at navigation; griefers who harass and annoy users and the empty world syndrome ie. a very large virtual world where 50K can seem very small.

Next was a long demo of what SL looks like and exploring different islands and functionality.

Web2.0, Library 2.0, and Librarian 2.0 by Jessamyn West was a great introduction to what We 2.0 is all about, especially for those in the room that might not have heard about it before. What was really great was that it wasn't so much technology focused but more focused on the attitude we should take to exploring new technological possibilities in our libraries. Showing people that tech doesn't have to be hard, we need to keep in mind that the digital divide is real and in our communities. What is library 2.0? It's like obscenity, you know it when you see it. We need to remember accessibility for disabled people as well as for elderly, easily confused to merely inexperienced. 2.0 is a user centred model, user generated content, trust your users, evaluate frequently and make use of patron input. L2 is not a "what" but a "how."

Avoid data & functional silos, ie. no static links to catalogue records. We need to remember what easy to use looks like and aim for that; we can look at Coha. Get it all on the web -- libx is a good example. Use wikis to replace reference binders, use booktalk site. We need to demand usability from vendors but we also have to take responsibility for giving constructive feedback. We need to use solid web standard development techniques. L2 is not a religion, it's a way of making stuff interactive and more feedback oriented.

Update 2008.02.19:
As promised, some blogs. Check 'em out!

February 13, 2008

Planet York

Thanks to the stellar efforts of my colleague Bill Denton, we here at York have just created something we call Planet York. It uses the Planet software to aggregate all the various blogs by York faculty, staff and students into one easy place for reading and enjoyment. As you can see, it's a bit of a mixed bag, but it's interesting that everything is pretty seriously intended and professional. It's also interesting that a good chunk of the blogs are either within the Libraries or the Law School.

We haven't really started promoting this around the institution yet, but I'm looking forward to seeing what kinds of reactions it can spur. I'm also hoping that it will encourage other York faculty, students and staff to explore blogging as a way to express themselves.

I think it was pretty easy to set up. If you have a strong and vibrant blogging community at your institution, it might be worth investigating something like this.

February 11, 2008

CrossRef launches free citation look up tool for bloggers

I know I don't usually reprint press releases here, but I think this one is worth it. I see a lot of potential for something like this, especially in concert with the Research Blogging movement. I can't wait to start playing around with it! (Do you think the WordPress version they talk about will work in blogger?)

CROSSREF LAUNCHES FREE CITATION LOOK-UP TOOL FOR BLOGGERS

Lynnfield, MA. February 12, 2008. -- CrossRef, the association behind the well-known publisher linking network, announced today that it had launched the beta version of a new plug-in that allows bloggers to look up and insert DOI®-enabled citations in the course of authoring a blog.

The plug-in, which is available for download at: https://sourceforge.net/projects/crossref-cite/, allows the blogger to use a widget-based interface to search CrossRef metadata using citations or partial citations. The results of the search, with multiple hits, are displayed and the author can then either click on a hit to follow the DOI to the publisher’s site, or click on an icon next to the hit to insert the citation into their blog entry (as either a full citation or as a short “op. cit.”).

According to Geoffrey Bilder, CrossRef’s Director of Strategic Initiatives, “CrossRef is helping jumpstart the process of citing the formal literature from blogs. While there is a growing trend in scientific and academic blogging toward referring to formally published literature, until now there were few guidelines and very few tools to make that process easy.”

At present, the CrossRef plug-in is available for the WordPress platform, and a Moveable Type version is under development. The tool is designed with the bulk of the functionality contained in a shared back-end hosted at CrossRef, making the plug-in GUI readily portable to other blogging and authoring platforms.

About CrossRef: CrossRef is a non-profit membership association founded and directed by publishers. Its mission is to enable easy identification and use of trustworthy electronic content by promoting the cooperative development and application of a sustainable infrastructure. CrossRef operates a cross-publisher citation linking system, and is the official DOI name registration agency for scholarly and professional content. More information is available at http://www.crossref.org.

CONTACT: citation-plugin@crossref.org

DOI® and DOI.ORG® are registered trademarks and the DOI> logo is a trademark of The International DOI Foundation

CrossRef® and CrossRef.org® are registered trademarks and the CrossRef logo is a trademark of PILA (Publishers International Linking Association

Jonathan Dahl on scholarly societies

Jonathan Dahl, IEEE Staff Director, Sales & Marketing, is interviewed in the most recent Against the Grain. It's a substantial, wide-ranging interview, touching on a lot of topics from the history of the IEEE, it's "rivalry" with the ACM and how to keep up with trends in technology.

But, most interestingly for us, AtG asks this question:

Why should we, your customers, care about whether a society or a commercial publisher publishes a journal?

Ah, my favorite topic! If you look at all the standard quality indices, like the Journal Citation Report, journals published by societies usually rank significantly higher than journals published by commercial publishers, at least in our space. I don’t hear that being remarked on as much as it should be. What we are also
finding out is that some of the less-standard indicators, like the generation of important new patents, strongly show the dominant influence of society journals.

Let me give you an example, and we’re very proud of this: Last year, in 2006, there were over 250,000 patents approved in the U.S. for the top 25 patent companies — companies like IBM, Hitachi, Samsung, HP, Sony, Intel, etc... That’s not just their patents in technology, its all patents — chemistry patents, nano patents,
mousetrap patents, all patents. Of these 250,000 patents, 38% of them were based on an IEEE journal article. That’s a phenomenal result! In second place, with 9% of patents, was Elsevier Science. Virtually all the other patents by these top 25 patent companies were based on papers published by scientific societies — the American Institute of Physics, the American Chemical Society, the American Vacuum Society, and so on.

So you can make a strong case that the intellectual property published by the scientific societies is driving R&D discovery and, ultimately, the economy itself. Moreover, if you look at the big commercial STM publishers, many of the journals they publish are on behalf of scientific societies that are too small to publish themselves.

So that’s why you should care if you’re subscribing to a society journal or a commercial journal. University libraries can and should be discriminating customers. And I won’t even begin to talk about price!


Thats a great answer. The importance of scholarly societies is undiminished in the scholarly communications landscape for the scitech fields, and as much as we drive for change and more open access in these fields, we still need to keep in our minds that we have to support these societies as they struggle to find workable business models for the future. Unlike commercial publishers, who's first priority must be profit, societies' first priorities must be the advancement of scholarship and giving good services to their members.

Of course, when societies stray from those ideals and act more like commercial publishers, we in the broader scientific community must call them on the betrayal of that trust.

And the IEEE is certainly one of the good guys as far as that goes. I met Jonathan at the IEEE Library Advisory Council meeting last fall and was impressed by his commitment to the engineering community and to the promotion of access to scholarship.

Come to think of it, it would have been great if AtG had asked him what he thought the publishing business model for scholarly societies was going to be in 10 or 15 years. Hmmm.

via What's New at IEEE, Libraries.

February 10, 2008

Sometimes these random web quizes are right on the money






Which Discworld Character are you like (with pics)
created with QuizFarm.com
You scored as The Librarian

You're the Librarian! Once a wizard, now an Orang-utan (due to an unfortunate magical accident), you refuse to be turned back for a few reasons: In this form, it's easier to reach the shelves and hold more books; having the strength of five men makes people return their books on time; life's great philosophical questions boil down to "when do I get my next banana?" You say "ook" but are usually understood well enough.


The Librarian


88%

Carrot Ironfounderson


63%

Gytha (Nanny) Ogg


56%

Cohen The Barbarian


44%

Rincewind


38%

Commander Samuel Vimes


38%

Death


31%

Esmerelda (Granny) Weatherwax


25%

Lord Havelock Vetinari


25%

Greebo


19%




via Hornswoggler.

February 7, 2008

Recently in ACM journals

ACM SIGMIS Database, v39i1



Communications of the ACM, v51i2

Best Science Books 2007: A couple more lists

I still have lots more lists still to post about, and I'll probably post them in intermittent bunches for the next little while.

Here's a few:

My old friend Claude Lalumiere mentions a couple of science books in his year-end summary of his sf,f,h reading at Locusmag:


  • Hollywood Science: Movies, Science, and the End of the World by Sidney Perkowitz (one of the freebies at the Science Blogging conference, I can't wait to read it.)
  • The World Without Us by Alan Weisman


Tim O'Reilly also publishes a list of the most significant technology books published by O'Reilly in 2007 over at O'Reilly Radar and at Amazon. Of course, the list is heavy on the programming manuals, so I'll just skip those and list the ones with a broader interest. How does O'Reilly define significant: "It's a list of books that say something to me about the changing mix of needs and interests among our customers."
  • Beautiful Code: Leading Programmers Explain How They Think edited by Andy Oram, Greg Wilson
  • Programming Collective Intelligence Building Smart Web 2.0 Applications by Toby Segaran
  • Devices of the Soul: Battling for Our Selves in an Age of Machines by Steve Talbott



The Third Culture Holiday Reading List -- Books By Edge Contributors (and others)— 2007. This is a huge list of books by the Edge people, those that they see as promoting a link to a third culture, going beyond the arts/science divisions. I'll pick a few out that don't seem to have made it on to too many other lists.
  • Super Crunchers: How Thinking by Numbers Is the New Way to Be Smart by Ian Ayres
  • Plutonium: A History of the World's Most Dangerous Element by Jeremy Bernstein
  • Red Moon Rising: Sputnik and the Hidden Rivalries that Ignited the Space Age by Matthew Brzezinski
  • I Am a Strange Loop by Douglas Hofstatder
  • Uncertainty: Einstein, Heisenberg, Bohr, and the Struggle for the Soul of Science by David Lindley
  • Mind, Life, and Universe: Conversations with Great Scientists of Our Time by Lynn Margulis & Eduardo Punset

SciBarCamp!

Here's something to mark down on the calendar on March 14-16: Toronto's upcoming SciBarCamp!

SciBarCamp is a gathering of scientists, artists, and technologists for a weekend of talks and discussions. It will take place at Hart House at the University of Toronto on the weekend of March 15-16, with an opening reception on the evening of March 14. The goal is to create connections between science, entrepreneurs and local businesses, and arts and culture. The themes are:
  • The edge of science (eg, synthetic biology, quantum gravity, cognitive science)
  • The edge of technology (eg, mobile web, ambient computing, nanotechnology, web 2.0)
  • Science 2.0 (open access, changing models of publication and collaboration, scientific software)
  • Scientific literacy and public engagement (eg, one laptop per child project, policy and science, technology as legislation, enfranchising the poor, the young, the old)
  • The interactions of science, art and culture: Scientists and artists as partners in the continuing evolution of the culture.


In the tradition of BarCamps, otherwise known as "unconferences", (see BarCamp.org for more information), the program is decided by the participants at the beginning of the meeting, in the opening reception. Presentations and discussion topics can be proposed here or on the opening night. SciBarCamp will require active participation; while not everybody will present or lead a discussion, everybody will be expected to contribute substantially - this will help make it a really creative event.

The talks will be informal and interactive; to encourage this, speakers who wish to give PowerPoint presentations will have ten minutes to present, while those without will have twenty minutes. Around half of the time will be dedicated to small group discussions on topics suggested by the participants. The social events and meals will make it easy to meet people from different fields and industries. Our venue, Hart House, is a congenial space with plenty of informal areas to work or talk, and there will be free wireless access throughout.

Our goals are:
  • Igniting new projects, collaborations, business opportunities, and further events.
  • Intellectual stimulation and good conversation.
  • Integrating science into Toronto's cultural, entrepreneurial, and intellectual activities.
  • Prototyping a model that can be easily duplicated elsewhere.


Attendance is free, but there is only space for around 100 people, so please register by sending an email to Jen Dodd (dodd.jen@gmail.com) with your name and contact details. Please include a link to your blog or your organization's webpage that we can display with your name on the participants list at www.SciBarCamp.org.

The list of participants is already looking pretty impressive, with 65 people signed up out of a projected 100. As you can see by the list, I was lucky enough to be invited by the organizers Jen Dodd, Jamie McQuay and Eva Amsen. I guess the old science bloggers network pays off!

February 5, 2008

The power of networking stems the flow of women leaving computer sciences

Really nice article in this week's ylife, York's student email newsletter: The power of networking stems the flow of women leaving computer sciences.

It's about the WiCSE program for Women in Computer Science & Engineering.

For Professor Melanie Baljko, WiCSE provides an essential support service to female students in computer science and engineering. Baljko, who has an interest in the challenges women face in computer science and engineering, has investigated a phenomenon referred to as the leaky pipe syndrome. "I have a longstanding interest in how to encourage women to start careers in computer science and engineering. I have been part of several initiatives at other universities and here at York to find out why the attrition rate is higher among women in computer science and engineering," said Baljko.

"I am particularly interested in why women come into computer science and engineering in smaller numbers and why the drop-out rate is higher," said Baljko. "There are also fewer women in higher management positions in the industry and even fewer in academia. Sociologists have studied this phenomenon called the 'leaky pipe syndrome'."

Baljko said that research has shown that practical solutions are essential in retaining young women in the profession, and groups such as WiCSE offer an important lifeline for female students who are often coping with multiple demands for their time and who have few role models to emulate. "In our group we have seen that practical solutions work and what is most effective is the social networking that groups such as WiCSE offer to young women entering the profession."

A large number of young women enrolled in computer science and engineering programs in Canada and the United States either do not finish their studies or end up leaving the profession, slipping away in silence, explained Baljko.

"There is a disproportionate loss due to women switching to other fields of study," said Baljko. "We [faculty] in computer science and engineering are striving to provide greater social context for the material in the computer science curriculum, so, even early on in undergraduate studies, we can show our field's usefulness to society."


It's a great article, well worth reading the whole thing. Bravo!